tiddlypwa
Secure offline storage and cross-device synchronization solution for TiddlyWiki 5
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AmuseWiki
Amusewiki is based on the Emacs Muse markup, remaining mostly compatible with the original implementation. It can work as a read-only site, as a moderated wiki, or as a fully open wiki or even as a private site.
BookStack
Organize and store information. Stores documentation in a book like fashion.
Documize
Modern Docs + Wiki software with built-in workflow, single binary executable, just bring MySQL/Percona.
Dokuwiki
Easy to use, lightweight, standards-compliant wiki engine with a simple syntax allowing reading the data outside the wiki. All data is stored in plain text files, therefore no database is required.
Feather Wiki
A lightning fast and infinitely extensible tool for creating personal non-linear notebooks, databases, and wikis that is entirely self-contained, runs in your browser, and is only 58 kilobytes in size.
Gitit
Wiki program that stores pages and uploaded files in a git repository, which can then be modified using the VCS command line tools or the wiki's web interface.